All functions
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addGenome()
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Add your own Genome |
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availableGenomes()
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List of available genomes |
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bt771
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scRNA-seq data from a patient with Glioblastoma |
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clip()
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Squish matrix values into range |
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cnaCor()
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Cell - Tumour CNA Correlations |
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cnaHotspotGenes()
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Find the Genes with the highest CNA signal |
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cnaPlot()
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Plot a Heatmap of CNA Values |
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cnaScatterPlot()
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Visualise Malignant and Non-Malignant Subsets |
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cnaSignal()
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Calculate the Means of Absolute CNA Values |
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colCenter()
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Center a matrix column-wise |
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currentGenome()
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List the current genome name |
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expandToClones()
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FUNCTION_TITLE |
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fetchModes()
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FUNCTION_TITLE |
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filterGenes()
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Filter Genes by their Genome Features |
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findClones()
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Find Clones |
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findMalignant()
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Find Malignant Subset of Cells |
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fitBimodal() fitModal()
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Fit a Bimodal Gaussian Distribution |
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genesOn()
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Retrieve Genes by their Genome Features |
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infercna()
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Infer Copy-Number Alterations From Single-Cell RNA-Seq Data |
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mgh125
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scRNA-seq data from a patient with Glioblastoma |
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modality()
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Test Distribution For Modality |
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orderGenes()
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Order Genes by their Genomic Positions |
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refCells
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Normal Cell IDs in a cohort of 28 Glioblastoma samples. |
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refCorrect()
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Convert Relative CNA Values To Absolute |
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retrieveGenome()
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Retrieve genome data |
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rowCenter()
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Center a matrix row-wise |
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runMean()
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Rolling Means |
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splitGenes()
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Split Genes By Chromosome (Arm) |
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useData()
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Load Example Data |
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useGenome()
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Select a Genome for infercna to use |