Score a Matrix with Marker Gene Sets Of Normal Cell Types

Score a Matrix with Marker Gene Sets Of Normal Cell Types. Wrapper around scalop::sigScores. Please see `?scalop::sigScores` for more details

markerScores(m, ...)

Arguments

m

a non-centered matrix of genes X cells/samples. The matrix will be row-centered internally prior to scoring.

...

other arguments passed to scalop::sigScores, although none are required.

Value

a dataframe of cell/sample scores. Each column describes scores for a different Marker Gene Set.

Details

the gene sets can be seen in Markers_Normal