Quality control statistics for single cell RNA seq data

Quality control statistics for single cell RNA seq data

ohmyqc(m, mito.genes = rownames(m)[startsWith(rownames(m), "MT-")])

Arguments

m

expression matrix of genes by cells in non-log2 space e.g. CPM or TPM.

mito.genes

character vector of mitochondrial gene names. Default: rownames(m)[startsWith(rownames(m), "MT-")]

Value

dataframe with columns: cell, detected_genes, housekeeping_expr, mito_Frac

See also

mapvalues